PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G117300.1
Common NameB456_012G117300, LOC105779443
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 172aa    MW: 19075.6 Da    PI: 8.6808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G117300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-095696954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r RR+ri ++f  L++++P       +K++ +++L +A++Y+k L
  Gorai.012G117300.1 56 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIHYVKFL 96
                        699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1484796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1352107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-1353100No hitNo description
SMARTSM003532.2E-1253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1253103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-75696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDYFPSANFS SSFIDGSSSV TTTSNNSSSC SKEKKKAGKK GKGAVKLSTD PQSVAARERR  60
HRISDRFKIL QSMVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQAMINFV DDDSSSLFLP  120
TSFPVETNIY PSSNPNPNLE PMQPSQLLPL PDSCFQGPQQ TMPYDAYMRH Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361130.0KP236113.1 Gossypium hirsutum ROX-like transcription factor (ROX) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458653.11e-126PREDICTED: transcription factor bHLH140-like
TrEMBLA0A0D2VYF01e-126A0A0D2VYF0_G
TrEMBLA0A0E3Z8Z01e-126A0A0E3Z8Z0_G
STRINGPOPTR_0006s10350.17e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-33APRATAXIN-like
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]